The idtracker.ai software tracks freely moving animals in large groups of up to 100 individuals. To demonstrate its versatility, the De Polavieja group has applied the software to track individuals in groups of fruit flies, zebrafish, medaka, ants and mice. Read the paper here and the February issue here.
February 2019 Cover

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Nature Methods
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And you will find a profile of Gonzalo de Polavieja here: https://www.nature.com/articles/s41592-018-0306-6 or here, as a full-text shareable link https://rdcu.be/bjrK1